Class NucleicPolymer

    • Field Detail

      • isDssrSet

        public boolean isDssrSet
      • htGroup1

        public static java.util.Map<java.lang.String,​java.lang.String> htGroup1
    • Constructor Detail

      • NucleicPolymer

        NucleicPolymer​(Monomer[] monomers)
    • Method Detail

      • getNucleicPhosphorusAtom

        Atom getNucleicPhosphorusAtom​(int monomerIndex)
      • calcRasmolHydrogenBonds

        public void calcRasmolHydrogenBonds​(BioPolymer polymer,
                                            javajs.util.BS bsA,
                                            javajs.util.BS bsB,
                                            javajs.util.Lst<Bond> vAtoms,
                                            int nMaxPerResidue,
                                            int[][][] min,
                                            boolean checkDistances,
                                            boolean dsspIgnoreHydrogens)
        Overrides:
        calcRasmolHydrogenBonds in class BioPolymer
      • addHydrogenBond

        protected static int addHydrogenBond​(javajs.util.Lst<Bond> vAtoms,
                                             Atom atom1,
                                             Atom atom2)