Enum FastqQualityFormat

    • Enum Constant Detail

      • Solexa

        public static final FastqQualityFormat Solexa
        Early Solexa/Illumina (pre pipeline 1.3) style scores which encode Solexa qualities using an ASCII offset of 64
      • Illumina

        public static final FastqQualityFormat Illumina
        Recent Solexa/Illumina (pipeline 1.3+) style scores which encode PHRED qualities using an ASCII offset of 64
      • Standard

        public static final FastqQualityFormat Standard
        Sanger style FASTQ files which encode PHRED qualities using an ASCII offset of 33
    • Method Detail

      • values

        public static FastqQualityFormat[] values()
        Returns an array containing the constants of this enum type, in the order they are declared. This method may be used to iterate over the constants as follows:
        for (FastqQualityFormat c : FastqQualityFormat.values())
            System.out.println(c);
        
        Returns:
        an array containing the constants of this enum type, in the order they are declared
      • valueOf

        public static FastqQualityFormat valueOf​(String name)
        Returns the enum constant of this type with the specified name. The string must match exactly an identifier used to declare an enum constant in this type. (Extraneous whitespace characters are not permitted.)
        Parameters:
        name - the name of the enum constant to be returned.
        Returns:
        the enum constant with the specified name
        Throws:
        IllegalArgumentException - if this enum type has no constant with the specified name
        NullPointerException - if the argument is null