Class ExternalByteEncoding
- java.lang.Object
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- htsjdk.samtools.cram.encoding.CRAMEncoding<T>
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- htsjdk.samtools.cram.encoding.external.ExternalEncoding<Byte>
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- htsjdk.samtools.cram.encoding.external.ExternalByteEncoding
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public final class ExternalByteEncoding extends ExternalEncoding<Byte>
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Field Summary
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Fields inherited from class htsjdk.samtools.cram.encoding.external.ExternalEncoding
externalBlockContentId
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Constructor Summary
Constructors Constructor Description ExternalByteEncoding(int externalBlockContentId)
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Method Summary
All Methods Static Methods Instance Methods Concrete Methods Modifier and Type Method Description CRAMCodec<Byte>
buildCodec(SliceBlocksReadStreams sliceBlocksReadStreams, SliceBlocksWriteStreams sliceBlocksWriteStreams)
Instantiate the codec represented by this encoding by supplying it with the appropriate streamsstatic ExternalByteEncoding
fromSerializedEncodingParams(byte[] serializedParams)
Create a new instance of this encoding using the (ITF8 encoded) serializedParams.-
Methods inherited from class htsjdk.samtools.cram.encoding.external.ExternalEncoding
toSerializedEncodingParams, toString
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Methods inherited from class htsjdk.samtools.cram.encoding.CRAMEncoding
buildReadCodec, buildWriteCodec, id, toEncodingDescriptor
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Method Detail
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fromSerializedEncodingParams
public static ExternalByteEncoding fromSerializedEncodingParams(byte[] serializedParams)
Create a new instance of this encoding using the (ITF8 encoded) serializedParams.- Parameters:
serializedParams
-- Returns:
- ExternalByteEncoding with parameters populated from serializedParams
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buildCodec
public CRAMCodec<Byte> buildCodec(SliceBlocksReadStreams sliceBlocksReadStreams, SliceBlocksWriteStreams sliceBlocksWriteStreams)
Description copied from class:CRAMEncoding
Instantiate the codec represented by this encoding by supplying it with the appropriate streams- Specified by:
buildCodec
in classCRAMEncoding<Byte>
- Parameters:
sliceBlocksReadStreams
- the core block bit stream aCoreCodec
will read fromsliceBlocksWriteStreams
- the core block bit stream aCoreCodec
will write to- Returns:
- a newly instantiated codec
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