Package htsjdk.samtools
Class NotPrimarySkippingIterator
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- htsjdk.samtools.SecondaryAlignmentSkippingIterator
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- htsjdk.samtools.NotPrimarySkippingIterator
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@Deprecated public class NotPrimarySkippingIterator extends SecondaryAlignmentSkippingIterator
Deprecated.useSecondaryAlignmentSkippingIterator
instead.Wrapper around SAMRecord iterator that skips over non-primary elements. This iterator conflates a filtering iterator and a peekable iterator. It would be cleaner to handle those concerns separately.
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Constructor Summary
Constructors Constructor Description NotPrimarySkippingIterator(CloseableIterator<SAMRecord> underlyingIt)
Deprecated.
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Constructor Detail
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NotPrimarySkippingIterator
public NotPrimarySkippingIterator(CloseableIterator<SAMRecord> underlyingIt)
Deprecated.
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